MOMD: Mouse Oral Microbiome Database

MOMD Genome Explorer

Selected genome: Escherichia coli 19428wD4_HM13

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from a total of 52 genomes

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PROKKA Genome Annotation:

contigs: 110

bases: 5,033,648 bps

CDS: 4,645

rRNA: 10

Repeat region:

tmRNA: 1

tRNA: 79

misc RNA:

Total features: 4,735

Total number of protein coding genes annotated/found: 4,645

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Molecule	PID/GenBank ID *^	Sequences	Size (NA/AA) ^	Range ^	Gene Product Name
SEQF5033\|JADGMH010000046.1	SEQF5033_03140	NA AA	1188/396	32-1219	putative diguanylate cyclase DgcT
SEQF5033\|JADGMH010000046.1	SEQF5033_03141	NA AA	1203/401	1498-2700	Prophage integrase IntA
SEQF5033\|JADGMH010000046.1	SEQF5033_03142	NA AA	516/172	3402-2887	hypothetical protein
SEQF5033\|JADGMH010000061.1	SEQF5033_03824	NA AA	531/177	601-1131	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02575	NA AA	480/160	670-191	putative protein YcjY
SEQF5033\|JADGMH010000032.1	SEQF5033_02576	NA AA	495/165	1162-1656	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02577	NA AA	396/132	1610-2005	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02578	NA AA	300/100	2046-2345	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02579	NA AA	423/141	2450-2872	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02580	NA AA	762/254	2850-3611	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02581	NA AA	1065/355	3769-4833	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02582	NA AA	723/241	5804-5082	HTH-type transcriptional regulator PgrR
SEQF5033\|JADGMH010000032.1	SEQF5033_02583	NA AA	783/261	5914-6696	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02584	NA AA	123/41	6822-6944	hypothetical protein
SEQF5033\|JADGMH010000032.1	SEQF5033_02585	NA AA	564/188	7472-8035	Type-1 fimbrial protein%2C A chain
SEQF5033\|JADGMH010000032.1	SEQF5033_02586	NA AA	711/237	8397-9107	Chaperone protein FocC
SEQF5033\|JADGMH010000032.1	SEQF5033_02587	NA AA	2652/884	9149-11800	Outer membrane usher protein FimD
SEQF5033\|JADGMH010000032.1	SEQF5033_02588	NA AA	531/177	11814-12344	Protein FimF
SEQF5033\|JADGMH010000032.1	SEQF5033_02589	NA AA	504/168	12357-12860	Protein FimG
SEQF5033\|JADGMH010000032.1	SEQF5033_02590	NA AA	915/305	12920-13834	Type 1 fimbrin D-mannose specific adhesin

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Page last updated: July 7, 2021 08:39:35